Evaluation of IGH partitioning utilities

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Datasets

Stanford_S22 dataset

The Stanford_S22 dataset consists of a set of IGH rearrangements from a single individual generated via high throughput sequencing as described in Boyd, 2010.

Click here to download the Stanford_S22 in FASTA format suitable for submission to a variety of IGH partitition utilities.

Partitioning results for Stanford_S22

The Stanford_S22 dataset was parititioned using a number of utilities in order to evaluate their accuracey utilising the S22 genotype. The partitioning results for the Stanford_S22 dataset, in a format suitable for submission to the evaluation utility, are available below.

• iHMMune-align   Utility accessible from here
• IgBLAST   Utility accessible from here
• IMGT/V-QUEST   Utility accessible from here
• SoDA   Utility accessible from here
• JOINSOLVER   Utility accessible from here
• VDJSolver   Utility accessible from here
• Ab-origin   Utility accessible from here